Uncategorized

SELF-REVIEW 2 PIN 5 FUNCTIONS

Sources of Information:

Subcellular homeostasis of phytohormone auxin is mediated by the ER-localized PIN5 transporter

Jozef Mravec1,2, Petr Sku°pa3, Aure´lien Bailly4, Kla´ra Hoyerova´3, Pavel Krˇecˇek3, Agnieszka Bielach1, Jan Petra´sˇek3,5, Jing Zhang1,2, Vassilena Gaykova2, York-Dieter Stierhof2, Petre I. Dobrev3, Katerˇina Schwarzerova´5, Jakub Rolcˇı´k6, Daniela Seifertova´3, Christian Luschnig7, Eva Benkova´1, Eva Zazˇı´malova´3, Markus Geisler4 & Jirˇı´ Friml1,8

The article focuses on finding PIN 5 role and its location in cells.

PICTURE 1 : 

PIN5  gene is quite different from the consensus that SELF-REVIEW 1 stated: PIN 5 has only  5 Exons, with ATG and TGA as its start codon and stop codon respectively.

PIN 5 protein has a FIVE-transmembrane hydrophonic domain, 

                              a FOUR-transmembrane hydrophobic domain, and

                               a VERY SHORT hydrophilic loop (virtually absent)

Image

 

PICTURE next is actually taken directly from the aforementioned article. The big surprise comes from it is the phylogenetic branchs of PIN 5, PIN 6, and PIN 8. It seems that PIN 6 and PIN 5 are more closely related to each other than to PIN 8. Anyway, here is the picture:

Image

 

PICTURE 2

In Auxin Transport Assay in Heterologous Yeast System, it is interesting seeing PIN5-HA in the Plasma Membrane (lately it is interpreted as result of PIN 5 ectopic expression). as expected from a member of PIN family, PIN 5 can transport auxin through PM.

PIN 5 is auxin-regulated   broadly expressed   auxin transporter.

T-DNA insertion generates Loss-of-Function pin5 mutants.

Gain-of-Function mutant is generated by employing STRONG PROMOTER to drive OVERexpression of PIN5.

Image

 

PICTURE 3

NEW but OLD: PIN 5 protein is located at ER membrane (also PIN 6, PIN 8 in Arabidopsis).

PIN 5 transport auxin from CYTOSOL into ER LUMEN, hence limiting the availability of cytosolic free auxin for auxin export, and increasing level of auxin in ER pool for auxin metabolism.

 

The relatively high sequence homology between PM-localized PIN and ER-localized PIN suggests the diversification of PIN is due to small motif changes.

By the way, because we mention MOTIF, I will talk about two types of motifs found in PIN protein:

(ONE) : Diacidic Motif: Two of them are found in LONG PIN only, and they are signal for PIN exit from ER.

(TWO): Tyrosine Motif: Found in all members of PIN family, recruits PIN into Clathrin-Coated Vesicles. HERE, the special thing does not come from the motif itself, in stead it comes from the varied sequences around the site of this motif.

Image

 

And last, the EXTRA picture (fun scan)

Image

OK! I can call it the end of today 🙂

Standard
Uncategorized

SELF_REVIEW 1: PIN Family of Auxin Transporters

Sources of Information: 

The PIN-FORMED (PIN) protein family of auxin transporters
Pavel Křeček*#, Petr Skůpa*#, Jiří Libus*, Satoshi Naramoto†, Ricardo Tejos†, Jiří Friml†, and Eva Zažímalová*

Picture 1

Arabidopsis PIN genes are divided into Long PIN Subfamily (PIN1, PIN2, PIN3, PIN4, PIN7, and PIN6 ) and Short PIN Subfamily (PIN5 and PIN8).

Long PIN Subfamily: Located at Plasma Membrane; Intercellular Auxin Transporters;

a distinct central hydrophilic loop.

Short PIN Subfamily: Located at Endoplasmic Reticulum; Intracellular Auxin Homeostasis.

Image

 

Picture 2

Genomic Organization of PIN genes: Two 5-transmembrane helices & One central hydrophilic loop.

Long PIN Subfamily: 6 Exons, E1 & E2 contribute to the variability of the central hydrophilic loop.

Short PIN Subfamily: Virtually absent hydrophilic loop, E1 is splitted into 2 small Exons.

Asterisk: PIN6 protein has a REDUCED hydrophilic loop.

Image

 

PICTURE 3

Hydrophobic domains: Highly sequence conserved helices, variable in SIZE & SEQUENCE of loops in-between transmembrane helices.

Hydrophilic loop: Limited sequence similarity between PIN groups.

MOTIFS: Two diacidic motifs (located in the N-terminal part of hydrophilic loop, LONG PIN ONLY) and One Tyrosine-based internalization motif (ALL PIN)

Image

 

PICTURE 4

Location of PIN proteins

Image

 

PICTURE 5

Four levels of regulation of PIN protein activity

ONE: Regulation of Transcription: Auxin, other phytohormones, plant growth factors

TWO: Regulation of PIN protein Degradation/Stability

THREE: Regulation of Subcellular Protein Trafficking: Clathrin-dependent endocytosis AND Guanine-exchange factor of ADP-ribosylation factor (ARF_GEF)-dependent exocytosis; Auxin; Transcytosis Mechanism; Phosphorylation.

FOUR: Regulation of Transport Activity: Auxin; D6 protein kinase; Synthetic compounds; auxin-transport inhibitors, flavonoid endogenous regulator.

Image

 

PICTURE 6

Mechanism of Action of PIN protein.

Long PIN proteins: Formation of Auxin Gradient & Formation of Auxin Maxima, underlie developmental processes and respond to environmental stimuli.

PIN5 protein: transport auxin from cytosol into ER lumen, decreasing free active auxin in cytosol.

Image

 

It has been my first self-review post so far, focusing on the STRUCTURE-FUNCTION- REGULATION of PIN Family 🙂

 

Standard
Plant Research

SHORTENING LIFE CYCLE

What an exciting, ridiculous, and promising idea =)))))

We, as ordinary people (or just people of scientific communities only T_T), have power as a GOD

We modify LIFESPAN

Isn’t it exciting

Scientific communities want to LENGTHEN lifespan

I myself want to SHORTEN life cycle

Isn’t it a little bit ridiculous : )

Scientists have been trying to find ways increasing HUMAN lifespan

I myself dream (oh no, I am fully awake 🙂 ) of decreasing PLANT life cycle

Isn’t it promising

Anyways, I find myself a thing in common to other people within scientific communities

I am keen on keeping living things a healthy state

Who wants to live longer? I guess many hands rising

Who wants to have a longer life but spend the whole years lying on bed? I guess nobody, again a guess =)

Who wants to have model plants, let say Arabidopsis thaliana, with all characteristics the same, except its life cycle changing from 6 weeks to only 3 weeks (hopefully)? Well, maybe principle investigators working on A.thaliana 😛

Shorter life cycle reduces time waiting for plants  to grow to give seeds

Shorter life cycle offers researchers chances to get all data they plan to obtain in a considerably shorter period of time; or you might hold a slightly different vision: by the same period of time that you have to spend to collect all data you need, now you can obtain double the amount of data needed

Just forget this raw example = )

Just forget an imagined life in a LABORATORY

What could be a potential benefit for the REAL WORLD?

Let say RICE PLANT, my country’s main grow-for-human-food one

1 year, 2 seasons, two 6-month periods, sowing twice, harvesting twice, 2 ton/head/season, 4 ton annual

What will be if the new life cycle of rice plant is no longer 180 days but 90 days (hopefully)?

1 year, 4 seasons, four 3-month periods, sowing 4 times, harvesting 4 times, 4 ton/head/season, 16 ton annual

Well

What a very promising benefit

But well

How to make it come true?

How to shorten plant life cycle?

That has to be my thesis at school, my lifetime future career,

I lose my way now,

How can I make it come true?

I am now seeking the answer on my road

Image

Adopted from

http://www.mun.ca/

Standard